Added time offset from waits also to ADwin AOUT trace (for plotting in lyse)

ADwinProII/ADwin_utils.py

@@ -206,5 +206,10 @@ def get_aout_trace(h5file, output):
         data = f["devices/ADwin/ANALOG_OUT/VALUES"][:]
         mask = (data["channel"] == port)
         t = np.round(PROCESSDELAY / CLOCK_T12 * data["n_cycles"][mask], 9)
+        if "data" in f and "waits" in f["data"]:
+                # There was a wait in the experiment, let's offset the times such that they are accurate
+                waits = f["data/waits"][:]
+                for i in range(len(waits)):
+                    t[t > waits["time"][i]] += waits["duration"][i]
         values = DAC(data["value"][mask])
     return t, values
\ No newline at end of file