updates from Sabrina

gui/gui.md

----
-author: Jan Zabloudil
-title: Applications
-revealOptions:
-transition: 'fade'
----
-
-# Graphical Applications
-
-Running graphical applications interactively
-
-  * is an important feature on our clusters
-  * is not a usual feature of HPC clusters
-  * because it also makes things complicated
-    * how/where to display the graphics
-    * scheduling of interactive jobs
-
-
----
-
-# Xpra
-
-  * is the tool we use for graphical applications
-  * in addition to VNC
-  * see [[06_background_info.html#(3)|Background information]] slides for more technical details
-
-
----
-
-# start VNC desktop
-
-  * start VNC server (e.g. on login node 1):
-
-```
-vncserver -geometry 1920x1080 -depth 24  :display-number
-```
-  * use UID (user id) minus 30000 as display-number
-  * MATE desktop (is a fork of Gnome 2) is preconfigured in ''~/.vnc/xstartup''
-  * connect your VNC-viewer to address ''mul-hpc-81a.unileoben.ac.at:display-number''
-    * or ''mul-hpc-81b'' for login node 2
-
-
----
-
-# Xpra overview
-
-  * Xpra server runs on same compute nodes as application
-    * it is started together with application in job script
-    * each application has a dedicated Xpra server
-  * the display can be detached and reattached any time
-
-
----
-
-# Job script
-
-# example for Abaqus CAE 2017
-
-```
-#!/bin/bash
-#SBATCH --partition E5-1650
-#SBATCH --qos=E5-1650-inter
-#SBATCH --nodes=1
-#SBATCH --ntasks-per-node=1
-#SBATCH --mem=15G
-#SBATCH --job-name=abqcae
-
-abq=/opt/sw/x86_64/generic/abaqus/Commands/abq2017
-
-xpra start                 \
-  --daemon=no              \
-  --exit-with-children=yes \
-  --start-child="$abq cae -mesa" 
-```
-
----
-
-# Job script
-
-# example for Fluent 17.1
-
-```
-#!/bin/bash
-#SBATCH --partition E5-2690v4
-#SBATCH --qos=E5-2690v4-inter
-#SBATCH --nodes=1
-#SBATCH --ntasks-per-node=14
-#SBATCH --mem=30G
-#SBATCH --job-name=fluent171
-
-fluent=/opt/sw/x86_64/generic/ansys_inc/v171/fluent/bin/fluent
-
-xpra start                 \
-  --daemon=no              \
-  --exit-with-children=yes \
-  --start-child="$fluent 3ddp -t1" 
-
-```
-
----
-
-# attach display
-
-  * to see the graphical output you must attach to the Xpra server
-    * use ''sbatch+display'' to submit and display a job
-    * use ''display JOBID'' to display job with given JOBID
-    * use ''display-all'' to display graphical output of all your jobs
-
-
----
-
-# detach display
-
-  * the display can be detached and reattached any time
-  * to detach the display:
-    * use ''undisplay JOBID'' for one JOBID
-    * use ''undisplay-all'' for all your jobs
-    * or use symbols on the upper right side of MATE desktop
-
-
----
-
-# attach/detach display
-
-Live demonstration.
-
-
----
-
-
+---
+author: Jan Zabloudil
+title: Applications
+revealOptions:
+transition: 'fade'
+---
+
+# Graphical Applications
+
+Running graphical applications interactively
+
+  * is an important feature on our clusters
+  * is not a usual feature of HPC clusters
+  * because it also makes things complicated
+    * how/where to display the graphics
+    * scheduling of interactive jobs
+    
+---
+
+# Xpra
+
+  * is the tool we use for graphical applications
+  * in addition to VNC
+
+
+---
+
+# Start VNC desktop
+
+## How to find out the VNC ID
+ * pxxxxxxx@hpc-login1:~$ id
+   uid=30252(pxxxxxxxx) gid=10100(staff) groups=10100(staff)
+   * uid=30252 -> vnc id =52
+ * start VNC server (e.g. on hpc-login1.unileoben.ac.at):
+
+```
+vncserver -geometry 1920x1080 -depth 24  :display-number
+```
+  * connect your VNC-viewer to address ''hpc-login1.unileoben.ac.at:display-number''
+    * or ''hpc-login2.unileoben.ac.at'' for login node 2
+
+
+---
+
+# Xpra overview
+
+  * Xpra server runs on same compute nodes as application
+    * it is started together with application in job script
+    * each application has a dedicated Xpra server
+  * the display can be detached and reattached any time
+
+
+---
+
+# Job script
+
+# Example for Abaqus CAE 2023
+
+```
+#!/bin/bash
+#
+#SBATCH --output=test.out
+#SBATCH --nodes=1
+#SBATCH --tasks-per-node=1
+#SBATCH --job-name=TEST_abq_GUI
+#SBATCH --partition=p11
+#SBATCH --mem=10G
+
+module purge
+
+geometry=1400x1050
+exe="/mulfs/app/generic/abaqus/2023/SIMULIA/Commands/abq2023 cae -mesa"
+param=""
+
+/mulfs/app/generic/gui/VncWrapper.sh "$geometry" "$exe" "$param"
+---
+```
+
+# Job script
+
+# Example for Fluent 2023 R2
+
+```
+#!/bin/bash
+#
+#SBATCH --output=test.out
+#SBATCH --nodes=1
+#SBATCH --tasks-per-node=1
+#SBATCH --job-name=fluent_GUI
+#SBATCH --partition=p11
+#SBATCH --mem=10G
+
+module purge
+fluent=/mulfs/app/generic/ansys_inc/2023R2/v232/fluent/bin/fluent
+geometry=1400x1050
+param=""
+
+/mulfs/app/generic/gui/VncWrapper.sh "$fluent" "$geometry" "$param"
+
+-------
+```
+
+
+# Attach display
+
+  * to see the graphical output you must attach to the Xpra server
+    * use ''sbatch+display'' to submit and display a job
+    * use ''display JOBID'' to display job with given JOBID
+    * use ''display-all'' to display graphical output of all your jobs
+    
+---
+
+# Detach display
+
+  * the display can be detached and reattached any time
+  * to detach the display:
+    * use ''undisplay JOBID'' for one JOBID
+    * use ''undisplay-all'' for all your jobs
+    * or use symbols on the upper right side of MATE desktop
+
+
+---
+
+# Attach/Detach display
+Live demonstration.
+
+
+---
+
+